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MolecularWare Inc digitalgenome software
Digitalgenome Software, supplied by MolecularWare Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/digitalgenome+software/digitalgenome+software/pmc03832940-287-0-2
Average 90 stars, based on 1 article reviews
digitalgenome software - by Bioz Stars, 2026-11
90/100 stars

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Related Articles

Standard Deviation:

Article Title: EVOLUTION OF INSECT METAMORPHOSIS: A MICROARRAY-BASED STUDY OF LARVAL AND ADULT GENE EXPRESSION IN THE ANT CAMPONOTUS FESTINATUS
Article Snippet: .. Exposure time for the Cy3 channel was 0.8 sec and exposure time for the Cy5 channel was 0.2 sec. Spot features (i.e., mean, median, standard deviation, and background intensities in the two channels) were extracted from TIFF image using DigitalGENOME software (MolecularWare, Irvine, CA). ..

Software:

Article Title: EVOLUTION OF INSECT METAMORPHOSIS: A MICROARRAY-BASED STUDY OF LARVAL AND ADULT GENE EXPRESSION IN THE ANT CAMPONOTUS FESTINATUS
Article Snippet: .. Exposure time for the Cy3 channel was 0.8 sec and exposure time for the Cy5 channel was 0.2 sec. Spot features (i.e., mean, median, standard deviation, and background intensities in the two channels) were extracted from TIFF image using DigitalGENOME software (MolecularWare, Irvine, CA). ..

Article Title: Transportation stress alters the circulating steroid environment and neutrophil gene expression in beef bulls.
Article Snippet: Stress and its association with altered immune function and incidence of respiratory diseases in cattle have lead to concerns over animal health and welfare during truck transportation.. Previously, bulls subjected to transportation stress displayed altered expression of candidate neutrophil genes, warranting a broader investigation of the neutrophil transcriptome and possible associations with fluctuations in circulating steroid hormones.. In the current study, blood was collected from six Belgian Blue Friesian bulls at 24, 0, 4.5, 9.75, 14.25, 24, and 48 h relative to initiation of 9 h of truck transportation.

Article Title: Gene expression studies for the analysis of domoic acid production in the marine diatom Pseudo-nitzschia multiseries.
Article Snippet: .. DigitalGenome software (MolecularWare, Cambridge, MA, USA) was then used to integrate annotated chip information with the tiff files and to visualize, edit and export the data for normalization. .. A loess algorithm was applied to the spot mean intensity values across replicate arrays within each biological experiment to correct for systematic biases using S+ArrayAnalyzer software (Insightful Corp., Seattle, WA, USA) [75,76].

Article Title: Systematic Expression Profiling of the Mouse Transcriptome Using RIKEN cDNA Microarrays
Article Snippet: .. Arrays were scanned using a ScanArray 5000 confocal scanning laser microscope (PerkinElmer Life Sciences), and then TIFF image data were extracted using DigitalGENOME software (MolecularWare), and finally reproducible spots were identified using the PRIM filtration program ( Kadota et al. 2001 ). ..

Article Title: Gene expression studies for the analysis of domoic acid production in the marine diatom Pseudo-nitzschia multiseries
Article Snippet: Dual-channel arrays were scanned at 595 nm (Cy3) and 685 nm (Cy5) on ArrayWoRx scanners (Applied Precision, Inc., Issaquah, WA, USA). .. DigitalGenome software (MolecularWare, Cambridge, MA, USA) was then used to integrate annotated chip information with the tiff files and to visualize, edit and export the data for normalization. .. DigitalGenome software (MolecularWare, Cambridge, MA, USA) was then used to integrate annotated chip information with the tiff files and to visualize, edit and export the data for normalization.

Article Title: Co-ordinated gene expression during phases of dormancy release in raspberry (Rubus idaeus L.) buds.
Article Snippet: .. Data were acquired from images using DigitalGenome software (Molecularware), and median signal intensities and background intensities (annulus setting) were determined for the Cy3 and Cy5 channels for each spot on the microarray. ..

Microscopy:

Article Title: Systematic Expression Profiling of the Mouse Transcriptome Using RIKEN cDNA Microarrays
Article Snippet: .. Arrays were scanned using a ScanArray 5000 confocal scanning laser microscope (PerkinElmer Life Sciences), and then TIFF image data were extracted using DigitalGENOME software (MolecularWare), and finally reproducible spots were identified using the PRIM filtration program ( Kadota et al. 2001 ). ..

Filtration:

Article Title: Systematic Expression Profiling of the Mouse Transcriptome Using RIKEN cDNA Microarrays
Article Snippet: .. Arrays were scanned using a ScanArray 5000 confocal scanning laser microscope (PerkinElmer Life Sciences), and then TIFF image data were extracted using DigitalGENOME software (MolecularWare), and finally reproducible spots were identified using the PRIM filtration program ( Kadota et al. 2001 ). ..

other:

Article Title: p63 and p73 Transcriptionally Regulate Genes Involved in DNA Repair
Article Snippet: The printed slides were rehydrated, UV cross-linked, and blocked to reduce background using succinic anhydride (Sigma), 1-methyl 2-pyrrolidinone and sodium borate.

Microarray:

Article Title: Co-ordinated gene expression during phases of dormancy release in raspberry (Rubus idaeus L.) buds.
Article Snippet: .. Data were acquired from images using DigitalGenome software (Molecularware), and median signal intensities and background intensities (annulus setting) were determined for the Cy3 and Cy5 channels for each spot on the microarray. ..



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